Get the Chemistry and Biochemistry Faculty Publications RSS feed

Subscribe to our feed

To enable the Chemistry and Biochemistry Faculty Publications RSS feed, simply drag this link into your RSS reader.

Follow

2013

PDF

Understanding precision nitrogen stress to optimize the growth and lipid content tradeoff in oleaginous green microalgae, Curtis Adams, Valerie Godfrey, Bruce Bugbee, Brad Wahlen, and Lance Seefeldt

PDF

Investigation of Antibacterial Mode of Action for Traditional and Amphiphilic Aminoglycosides, Venkatareddy Udumula, Young Wan Ham, Marina Y. Fosso, Ka Yee Chan, Ravi Rai, Jianjun Zhang, Jie Li, and Cheng-Wei Tom Chang

2012

A 3‐dimensional time‐resolved photothermal deflection “Mirage” method, N. G.C. Astrath, L. C. Malacarne, G. V.B. Lukasievicz, H. S. Bernabe, J. H. Rohling, M. L. Baesso, J. Shen, and Stephen E. Bialkowski

The molecular details of WPD-loop movement differ in the protein-tyrosine phosphatases YopH and PTP1B, Tiago A.S. Brandão, Alvan C. Hengge, and Sean J. Johnson

PDF

BOTPPI, a New Wittig Salt Used in the Synthesis of 12-(S)-Hydroxy-Eicosatetraenoic Acid [12-(S)-HETE], M. A. Christiansen and M. B. Andrus

2011

Synthesis of Substrates to Probe the Biochemistry of the Ecteinascidin 743 (ET-743) Biosynthetic Gene Cluster, M. A. Christiansen, A. Jimenez-Somarribas, C. M. Rath, R. M. Williams, and D. H. Sherman

A Compact Pulsed Infrared Laser Excited Photothermal Deflection Spectrometer, Oluwatosin O. Dada and Stephen E. Bialkowski

Time‐Resolved Thermal Lens and Thermal Mirror Spectroscopies with Sample‐Fluid Heat Coupling: A Complete Model for Material Characterization, Luis C. Malacarne, Nelson G.C. Astrath, Gustavo V.B. Lukasievicz, Ervin K. Lenzi, Mauro L. Baesso, and Stephen E. Bialkowski

Meta-omic characterization of the marine invertebrate microbial consortium that produces the chemotherapeutic natural product ET-743, C. M. Rath, B. Janto, J. Earl, A. Ahmed, F. A. Hu, L. Hiller, M. Dahlgren, R. Kreft, F. Yu, J. J. Wolff, H. K. Kweon, M. A. Christiansen, K. Hakansson, R. M. Williams, G. D. Ehrlich, and D. H. Sherman

Insights into the Phosphoryl Transfer Mechanism of Cyclin-Dependent Protein Kinases from ab Initio QM/MM Free-Energy Studies, Gregory K. Smith, Zhihong Ke, Hua Guo, and Alvan C. Hengge

2010

Definition of the Hydrogen Bond, E. Arunan, G. R. Desiraju, R. A. Klein, J. Sadlej, Steve Scheiner, I. Alkorta, D. C. Clary, R. H. Crabtree, J. J. Duannenberg, P. Hobza, H. G. Kiaergaard, A. C. Legon, B. Mennucci, and D. J. Nesbitt

Pulsed‐Laser Excited Thermal Lens Spectroscopy With Sample‐Fluid Heat Coupling, G. C. Astrath, Luis C. Malacarne, Paulo R.B. Pedreira, Marcos P. Belancon, Mauro L. Baesso, Prakash R. Joshi, and Stephen E. Bialkowski

Phosphoryl and Sulfuryl Transfer, Tiago A.S. Brandão and Alvan C. Hengge

Insights into the Reaction of Proteintyrosine Phosphatase 1B: Crystal Structures for Transition State Analogs of Both Catalytic Steps, Tiago A.S. Brandão, Alvan C. Hengge, and Sean J. Johnson

Pulsed Laser Excited Photothermal Lens Spectrometry of Cadmium Sulfoselenide Doped Silica Glasses, Prakash R. Joshi, Oluwatosin Dada, and Stephen E. Bialkowski

Analytical Solution for Mode‐Mismatched Thermal Lens Spectroscopy with Sample‐Fluid Heat Coupling, Luis C. Malacarne, Nelson G.C. Astrath, Paulo R.B. Pedreira, Renio S. Mendes, Mauro L. Baesso, Prakash R. Joshi, and Stephen E. Bialkowski

The Divalent Metal Ion in the Active Site of Uteroferrin Modulates Substrate Binding and Catalysis, Natasa Mitic, Kieran S. Hadler, Lawrence R. Gahan, Alvan C. Hengge, and Gerhard Schenk

Cooperativity of Multiple H-Bonds in Influencing Structural and Spectroscopic Features of the Peptide Unit of Proteins, Steve Scheiner

MacMillan Encyclopedia of Chemistry, Steve Scheiner

Review of: The Nature of the Hydrogen Bond, by G. Gilli and P. Gilli, Steve Scheiner

Theoretical Analysis of the Contributions Made by CH∙∙O H-bonds to Protein Structure, Steve Scheiner

Unconventional H-bonds: SH∙∙∙N Interaction, M. Solimannejad and Steve Scheiner

2009

Phase-Transfer Catalyzed Asymmetric Arylacetate Alkylation, M. B. Andrus, K. C. Harper, M. A. Christiansen, and M. A. Binkley

Phase-Transfer Catalyzed Asymmetric Arylacetate Alkylation, M. B. Andrus, K. C. Harper, M. A. Christiansen, and M. A. Binkley

Impaired acid catalysis by mutation of a protein loop hinge residue in a YopH mutant revealed by crystal structures, T. A.S. Brandão, H. Robinson, S. J. Johnson, and Alvan C. Hengge

Synthesis of Kurasoin B Using Phase-Transfer-Catalyzed Acylimidazole Alkylation, M. A. Christiansen, A. W. Butler, A. R. Hill, and M. B. Andrus

Mechanism and Transition State Structure of Aryl Methylphosphonate Esters Doubly Coordinated to a Dinuclear Cobalt(III) Center, Guoqiang Feng, Eric A. Tanifum, Harry Adams, Alvan C. Hengge, and Nicholas H. Williams

The Heat Capacities and Standard Entropies of Corresponding Potassium and Ammonium Ion Species: Is There a Constant Difference?, H. D. B. Jenkins, J. F. Liebman, M. Ponkivar, and Steve Scheiner

Pulsed‐Laser Excited Photothermal Study of Cadmium Sulfoselenium Nanoparticle Doped Glasses, Prakash R. Joshi, Oluwatosin Dada, and Stephen E. Bialkowski

Antiproliferative and Protein Kinase Binding Activities of Some N6,5'-Bis-ureido 5'-Amino-5'-deoxyadenosine Derivatives, M. A. Peterson, M. Oliveira, and M. A. Christiansen

Preliminary SAR Analysis of Novel Antiproliferative N6,5ˈ-Bis-Ureidoadenosine Derivatives, M. A. Peterson, M. Oliveira, M. A. Christiansen, and C. E. Cutler

Link

Identification of Spectroscopic Patterns of CH···O H-Bonds in Proteins, Steve Scheiner

Ingredients Necessary for Proton Transfer in Enzymes, Steve Scheiner

Quantum Chemical Analysis of the Energetics of the anti- and gauche- Conformers of Ethanol, Steve Scheiner and P. G. Seybold

Active-Site Dynamics of SpvC Virulence Factor from Salmonella typhimurium and Density Functional Theory Study of Phosphothreonine Lyase Catalysis, Gregory K. Smith, Zhihong Ke, Alvan C. Hengge, Dingguo Xu, Daiqian Xie, and Hua Guo

Existence and Characterization of HOO-HOOOH Radical-Molecule Complexes: A Computational Study, M. Solimannejad, S. Massahi, and Steve Scheiner

Link

Nature of Interactions in Open-Shell Complexes Pairing H2X with HXX, X=S,O, Mohammad Solimannejad and Steve Scheiner

2008

Development of Infrared Photothermal Deflection Spectroscopy (Mirage Effect) for Analysis of Condensed‐phase Aerosols Collected in a Micro‐Orifice Uniform Deposit Impactor, Oluwatosin Dada and Stephen E. Bialkowski

Finite Element Analysis Modeling of Pulse‐Laser Excited Photothermal Deflection (Mirage Effect) from Aerosols, Oluwatosin Dada and Stephen E. Bialkowski

Substrate-Promoted Formation of a Catalytically Competent Binuclear Center and Regulation of Reactivity in a Glycerophosphodiesterase from Enterobacter aerogenes, K. S. Hadler, E. A. Tanifum, S. H.C. Yip, N. Mitic, L. W. Guddat, C. J. Jackson, L. R. Gahan, K. Nguyen, P. D. Carr, D. L. Ollis, Alvan C. Hengge, J. A. Larrabee, and g. Schenk

An Altered Transition State for the Reaction of an RNA Model Catalyzed by a Dinuclear Zinc(II) Catalyst, T. Humphry, S. Iyer, O. Iranzo, J. R. Morrow, J. P. Richard, Piotr Paneth, and Alvan C. Hengge

The Effects of Sulfur Substitution for the Nucleophile and Bridging Oxygen Atoms in Reactions of Hydroxyalkyl Phosphate Esters, Subashree Iyer and Alvan C. Hengge

Link

Noncovalent π−π Stacking and CH---π Interactions of Aromatics on the Surface of Single-Wall Carbon Nanotubes: An MP2 Study, T. Kar, H. Bettinger, Steve Scheiner, and A. K. Roy

Theoretical Investigation of the Mechanism of LiH + NH3 → LiNH2 + H2, T. Kar, Steve Scheiner, and L. Li

Link

Bonding Rearrangements of Hydrogen Bonded Complexes involving Alkynes, E. S. Kryachko and Steve Scheiner

Structure and Properties of Perfluoroalkylated Phthalocyanines. A Theoretical Study, M.-S. Liao, J. D. Watts, S. M. Gorun, Steve Scheiner, and M.-J. Huang

Mechanistic Study of Protein Phosphatase-1 (PP1), A Catalytically Promiscuous Enzyme, C. McWhirter, E. A. Lund, E. A. Tanifum, G. Feng, Q. L. Sheikh, Alvan C. Hengge, and N. H. Williams

Link

Analysis of Catalytic Mechanism of Serine Proteases. Viability of Ring-Flip Hypothesis, Steve Scheiner

Solvation of Hydrogen Bonded Systems: CH··O, OH··O, and Cooperativity, Steve Scheiner

Link

Spectroscopic and Structural Signature of the CH--O H-Bond, Steve Scheiner and T. Kar

Link

Complexes Pairing Hypohalous Acids with Nitrosyl Hydride. Blue Shift of a NH Bond that is Uninvolved in a H-bond, M. Solimannejad and Steve Scheiner

2007

Phase-Transfer-Catalyzed Asymmetric Acylimidazole Alkylation, M. B. Andrus, M. A. Christiansen, E. J. Hicken, M. J. Gainer, D. K. Bedke, K. C. Harper, S. R. Mikkelson, D. S. Dodson, and D. T. Harris

Probing the Origin of the Compromised Catalysis of E. coli Alkaline Phosphatase in its Promiscuous Sulfatase Reaction, Irina Catrina, Patrick J. O'Brien, Jamie Purcell, Ivana Nikolic-Hughes, Jesse G. Zalatan, Alvan C. Hengge, and Daniel Herschlag

Diesterase Activity and Substrate Binding in Purple Acid Phosphatases, R. S. Cox, G. Schenk, N. Mitic, L. Gahan, and Alvan C. Hengge

Continuous Laser‐Excited Photothermal Spectrometry of CdSxSe1‐x Doped Glasses, Oluwatosin Dada, Matthew R. Jorgensen, and Stephen E. Bialkowski

Link

Minimum Energy Pathways for Proton-Transfer between Adjacent Sites Exposed to Water, R. Friedman, S. Fischer, E. Nachliel, Steve Scheiner, and M. Gutman

The Use of Isotopes in the Study of Reactions of Acyl, Phosphoryl, and Sulfuryl Esters, R. H. Hoff and Alvan C. Hengge

Periodicity in Proton Conduction along a H-bonded Chain. Application to Biomolecules, A. Isaev, T. Kar, and Steve Scheiner

Link

The Strength with Which a Peptide Group Can Form a Hydrogen Bond Varies with the Internal Conformation of the Polypeptide Chain, Steve Scheiner

Underlying Source of the Relation between Polypeptide Conformation and Strength of NH··O Hydrogen Bonds, Steve Scheiner and T. Kar

Link

Theoretical Evidence for a NH···XC Blue-Shifting Hydrogen Bond:  Complexes Pairing Monohalomethanes with HNO, M. Solimannejad and Steve Scheiner

Link

Analysis of Complexes Pairing Hydroperoxyl Radical with Peroxyformic Acid, M. Solimannejad, S. Gh. Shirazi, and Steve Scheiner

Mechanism of Rhodium- Catalyzed Carbene Formation from Diazo Compounds, Freeman M. Wong, Jianbo Wang, Alvan C. Hengge, and Weiming Wu

Kinetic Isotope Effects for Alkaline Phosphatase Reactions: Implications for the Role of Active- Site Metal Ions in Catalysis, J. G. Zalatan, I. Catrina, R. Mitchell, P. K. Grzyska, P. J. O'Brien, D. Herschlag, and Alvan C. Hengge

2006

Enzymatic Mechanisms of Phosphate and Sulfate Transfer, W. W. Cleland and Alvan C. Hengge

The Transition State of the Sulfuryl Transfer Reaction of Estrogen Sulfotransferase, R. H. Hoff, P. G. Czyryca, M. Sun, T. S. Leyh, and Alvan C. Hengge

Link

Cooperativity of Conventional and Unconventional Hydrogen Bonds Involving Imidazole, Tapas Kar and Steve Scheiner

Transesterification Thio Effects of Phosphate Diesters: Free Energy Barriers and Kinetic and Equilibrium Isotope Effects from Density-Functional Theory, Y. Liu, A. Gregersen, Alvan C. Hengge, and D. M. York

Metal-Catalyzed Phosphodiester Cleavage: Secondary 18O Isotope Effects as an Indicator of Mechanism, J. Rawlings, W. W. Cleland, and Alvan C. Hengge

Contribution of CH··X Hydrogen Bonds to Biomolecular Structure, Steve Scheiner

Link

Contributions of NH···O and CH···O Hydrogen Bonds to the Stability of β-Sheets in Proteins, Steve Scheiner

Link

Stabilities and Properties of Complexes Pairing Hydroperoxyl Radical with Monohalomethanes, M. Solimannejad and Steve Scheiner

Thermodynamic Origin of the Increased Rate of Hydrolysis of Phosphate and Phosphorothioate Esters in DMSO/Water Mixtures, K. Sorensen-Stowell and Alvan C. Hengge

2005

Mechanistic Studies on Enzyme-Catalyzed Phosphoryl Transfer, Alvan C. Hengge

Secondary Isotope Effects, Alvan C. Hengge

Physical Organic Perspectives on Phospho Group Transfer from Phosphates and Phosphinates, Alvan C. Hengge and I. Onyido

Link

Stepwise Hydration of Ionized Aromatics. Energies and Structures of the Hydrated Benzene Cation, and the Mechanism of Deprotonation Reactions, Yehia M. Ibrahim, Michael Meot-Ner, Edreese H. Alshraeh, M. Samy El-Shall, and Steve Scheiner

Effects of Peripheral Substituents on the Electronic Structure and Properties of Unligated and Ligated Metal Phthalocyanines, Metal = Fe, Co, Zn, M.-S. Liao, J. D. Watts, M.-J. Huang, S. M. Gorun, T. Kar, and Steve Scheiner

A Concerted Mechanism for the Transfer of the Thiophosphinoyl Group from Aryl Dimethylphosphinothioate Esters to Oxyanionic Nucleophiles in Aqueous Solution, I. Onyido, K. Swierczek, J. Purcell, and Alvan C. Hengge

The Thermodynamics of Phosphate versus Phosphorothioate Ester Hydrolysis, J. Purcell and Alvan C. Hengge

Link

Relative Strengths of NH··O and CH··O Hydrogen Bonds between Polypeptide Chain Segments, Steve Scheiner

The CH··O Hydrogen Bond. A Historical Account, Steve Scheiner

Link

Effect of Solvent upon CH···O Hydrogen Bonds with Implications for Protein Folding, Steve Scheiner and T. Kar

Link

Theoretical Investigation of the Dihydrogen Bond Linking MH2 with HCCRgF (M=Zn,Cd; Rg=Ar,Kr), M. Solimannejad and Steve Scheiner

Examination of P-OR Bridging Bond Orders in Phosphate Monoesters using 18O Isotope Shifts in 31P NMR, K. Sorensen-Stowell and Alvan C. Hengge

Probing Potential Medium Effects on Phosphate Ester Bonds Using 18O Isotope Shifts on 31P NMR, K. Sorensen-Stowell and Alvan C. Hengge

2004

Infrared Spectroscopy: Photothermal, Stephen E. Bialkowski

An Investigation of the Sulfuryl Transfer Step from Substrate to Enzyme by Aryl Sulfatases, S. G. Gibby, J. M. Younker, and Alvan C. Hengge

Probing the Transition- State Structure of Dual-Specificity Protein Phosphatases Using a Physiological Substrate Mimic, P. K. Grzyska, Y. Kim, M. D. Jackson, Alvan C. Hengge, and J. M. Denu

Phosphoryl Transfer Reactions, Alvan C. Hengge

Altered mechanisms of reactions of phosphate esters bridging a dinuclear metal center, T. Humphry, M. Forconi, N. H. Williams, and Alvan C. Hengge

A nonhydrolyzable analogue of phosphotyrosine, and related aryloxymethano- and aryloxyethano- phosphonic acids as motifs for inhibition of phosphatases, S. Iyer, J. M. Younker, P. G. Czyryca, and Alvan C. Hengge

Link

Comparison of Cooperativity in CH···O and OH···O Hydrogen Bonds, T. Kar and Steve Scheiner

Link

CH··F Hydrogen Bonds. Dimers of Fluoromethanes, E. Kryachko and Steve Scheiner

Link

Actinyls in Expanded Porphyrin:  A Relativistic Density-Functional Study, M.-S. Liao, T. Kar, and Steve Scheiner

Effects of Peripheral Substituents and Axial Ligands on the Electronic Structure and Properties of Iron Phthalocyanine, M.-S. Liao, T. Kar, and Steve Scheiner

Mechanistic Studies of Protein Tyrosine Phosphatases YopH and Cdc25A with m-Nitrobenzyl Phosphate, D. F. McCain, P. K. Grzyska, L. Wu, Alvan C. Hengge, and Z. Y. Zhang

Link

Substitution Patterns in Mono-BN-Fullerenes:  Cn (n = 20, 24, 28, 32, 36, and 40), J. Pattanayak, T. Kar, and Steve Scheiner

Link

Nonbonded Interactions, Steve Scheiner

Quantities, Terminology, and Symbols in Photothermal and Related Spectroscopies, Masahide Terazima, Noboru Hirota, Silvia E. Braslavsky, Andreas Mandelis, Stephen E. Bialkowski, Gerald J. Diebold, R. J.D. Miller, Daniele Fournier, Richard A. Palmer, and Andy Tam