Digital Commons – Data Fields

Author(s) AND their Email addresses
Trevor Fish,  trevor.fish@aggiemail.usu.edu
Abby Benninghoff, abby.benninghoff@usu.edu


Title of Your Dataset or Journal article:
Fish, T. (2015). DNA methylation in lung tissues of mouse offspring exposed in utero to polycyclic aromatic hydrocarbons:  Appendix D. Gene lists for ontology analysis.  MS Thesis, Utah State University, Logan, UT. 

Description (short description of your dataset; indicate it is supporting an article):
This Microsoft Excel file contains sets of gene accession numbers (MGI accession), sorted by colomn, representing genes methylated in one (or more) tissue type(s) and not in others according to the comparisons specified in the column header and also in Table D.1. 

Comments:(anything you need people to know right up front – special software they will need to use your data?  Order of download or use?  This information appears on the front of the Digital Commons page, with the title, the Journal title, authors, etc. so it’s a good place to show users important information)

Table D.1 indicates the specific comparisons performed to generate gene lists for ontology analysis and the number of genes in each resulting data set.

TABLE D.1
List of Comparisons Among Tissue Types to Generate 
Gene Lists for Ontology Analysis
Comparisons						Number of genes in list
Methylated in Sham but not AdjDBC or TumDBC		271
Methylated in AdjDBC but not Sham or TumDBC		147
Methylated in TumDBC but not Sham or AdjDBC		150
Methylated in Sham but not AdjBAP or TumBAP		160
Methylated in AdjBAP but not Sham or TumBAP		159
Methylated in TumBAP but not Sham or AdjBAP		218
Methylated in Sham but not TumDBC or TumBAP		239
Methylated in TumDBC but not Sham or TumBAP		127
Methylated in TumBAP but not Sham or TumDBC		143
Methylated in TumDBC and TumBAP but not Sham		93



Discipline: Toxicology
We usually select based on your department and area
You can see a list of disciplines here:  http://network.bepress.com/
At the bottom of the page, you can click and drill down through the subsequent pages to see additional breakdown.


Keywords:
Lung cancer, polycyclic aromatic hydrocarbons, transplacental, offspring, DNA methylation, epigenetics

Journal:  Not applicable
If applicable, name of journal in which your article is appearing that your dataset is supporting


Volume, Issue, Date (year is fine that is all you have): Not applicable
For journal issue


Embargo:  1 year embargo*
Date that you want the data to be made public.  If immediate, enter today’s date


* This paper has not yet been submitted to a journal, so this embargo time is included in case the journal requires an embargo.  If not, then I will contact USU Library to lift the embargo.  If the journal does require an embargo of longer duration, then I will also request a change in the timeline.