Author ORCID Identifier

Abby Benninghoff https://orcid.org/ 0000-0002-7993-0117

OCLC

985526243

Document Type

Dataset

DCMI Type

Dataset

File Format

.xlsx, .txt

Publication Date

2015

Publisher

Utah State University

Referenced by

Fish, T. J., & Benninghoff, A. D. (2017). Data on the effect of in utero exposure to polycyclic aromatic hydrocarbons on genome-wide patterns of DNA methylation in lung tissues. Data in Brief, 13, 498–513. https://doi.org/10.1016/j.dib.2017.06.023

Language

eng

Comments

This Microsoft Excel file contains sets of gene accession numbers (MGI accession), sorted by colomn, representing genes methylated in one (or more) tissue type(s) and not in others according to the comparisons specified in the column header and also in Table D.1.

Table D.1 indicates the specific comparisons performed to generate gene lists for ontology analysis and the number of genes in each resulting data set.

TABLE D.1

List of Comparisons Among Tissue Types to Generate

Gene Lists for Ontology Analysis

  • Comparisons - Number of genes in list
  • Methylated in Sham but not AdjDBC or TumDBC - 271
  • Methylated in AdjDBC but not Sham or TumDBC - 147
  • Methylated in TumDBC but not Sham or AdjDBC - 150
  • Methylated in Sham but not AdjBAP or TumBAP - 160
  • Methylated in AdjBAP but not Sham or TumBAP - 159
  • Methylated in TumBAP but not Sham or AdjBAP - 218
  • Methylated in Sham but not TumDBC or TumBAP - 239
  • Methylated in TumDBC but not Sham or TumBAP - 127
  • Methylated in TumBAP but not Sham or TumDBC - 143
  • Methylated in TumDBC and TumBAP but not Sham - 93

Disciplines

Toxicology

License

Creative Commons License
This work is licensed under a Creative Commons Attribution 4.0 License.

Checksum

85eaec8ea0a94fcc52fd236fc486a3c6

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Additional Files

readmeD.txt (2 kB)
MD5: 72ed0e948b51fb6e95d4f53cca137a52

Fish MS Thesis Appendix D. Gene Lists for Ontology Analysis.xlsx (60 kB)
MD5: 7ebc77ae7cf3e3188df3b63b7130e598

Included in

Toxicology Commons

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