Data from "Admixture, evolution, and variation in reproductive isolation in the Boechera puberula clade"

Creators

Martin Peter Schilling, Utah State UniversityFollow
Zachariah Gompert, Utah State UniversityFollow
Fay-Wei Li
Michael D. Windham
Paul G. Wolf, Utah State UniversityFollow

Description

- .fastq files (Raw data from 79 individuals) - zipped

- *.vcf file (variant call files)

- *.gl (genotype likelihoods file)

- k8admixProps.csv (admixture proportions)

- k8gprob_mngt.txt (mean genotypes estimated by entropy)

- All scripts for analysis can be found at Github repository. https://github.com/schimar/hts_tools

Author ORCID Identifier

Zachariah Gompert https://orcid.org/ 0000-0003-2248-2488

Paul G. Wolf https://orcid.org/ 0000-0002-4317-6976

OCLC

1078225181

Document Type

Dataset

DCMI Type

Dataset

File Format

.csv, .fastq, .vcf, .gl, .txt

Publication Date

9-15-2017

Funder

NSF, Division of Environmental Biology

Utah State University Ecology Center

Publisher

Utah State University

Award Number

NSF, Division of Environmental Biology 0816560

Scientfic Names

B. serpenticola, B. retrofacta, B. puberula subsp. puberula, B. subpinnatifida, B. lasiocarpa, B. puberula subsp. arida

Referenced by

Schilling, M.P., Gompert, Z., Li, F. et al. Admixture, evolution, and variation in reproductive isolation in the Boechera puberula clade. BMC Evol Biol 18, 61 (2018). https://doi.org/10.1186/s12862-018-1173-6

Language

eng

Code Lists

serpenti = B. serpenticola

retro = B. retrofacta

p.pub = B. puberula subsp. puberula

subpi = B. subpinnatifida

lasio = B. lasiocarpa

p. arida = B. puberula subsp. arida

Comments

Funding:

Lab work and High-throughput sequencing were partly funded by a USU Ecology Center Graduate Research Award for MPS; additional microsatellite work was funded under National Science Foundation award DEB-0816560 to MDW.

License

This work is licensed under a Creative Commons Attribution 4.0 License.

Recommended Citation

Schilling, M. P., Gompert, Z., Li, F.-W., Windham, M. D., & Wolf, P. G. (2017). Data from "Admixture, evolution, and variation in reproductive isolation in the Boechera puberula clade". Utah State University. https://doi.org/10.15142/T3Z91H

Checksum

27b274ee93491c0b85d34cfd7e5f2b22