Description

The dataset contains six files of tabular data with an accompanying README file.

Supplementary file 1: Customized probe annotation file for the Nanostring nCounter Mouse PanCancer Immune Profiling Panel (catalog # 115000142). This file is provided as supporting material for a journal article. Codes for columns are in file.

Supplementary file 2: Microsoft Excel document with output from nSolver for differential expression analyses for pairwise comparisons noted by each named sheet. This data set is supporting material for a journal article. Codes for columns are listed in README.

Supplementary File 3: Microsoft Excel document with output from nSolver for global and directed significance scores for immune pathways. This data set is supporting material for a journal article.

Supplementary File 4: Microsoft Excel document with output from nSolver for immune pathway Z scores for pairwise comparisons noted by each named sheet (11 sheets total). This data set is supporting material for a journal article.

Supplementary File 5: Microsoft Excel document with output from nSolver for cell type profiling scores for VEH vs cSiO2 exposed mice, as noted by each tab name (8 sheets total). This data set is supporting material for a journal article.

Supplementary File 6: Microsoft Excel document with protein networks obtained from STRING database and clusters predicted by the MCL algorithm. This data set is supporting material for a journal article. File contains 14 sheets. Descriptions for columns of the "network" sheets are in the README file

Author ORCID Identifier

Abby D. Benninghoff https://orcid.org/ 0000-0002-7993-0117

OCLC

1090815389

Document Type

Dataset

DCMI Type

Dataset

File Format

.csv, .xlsx, .txt

Publication Date

5-20-2019

Funder

NIH

Publisher

Utah State University

Award Number

NIH R01ES027353

Award Title

Dietary Lipids and Silica-Triggered Autoimmunity

Methodology

see corresponding journal publication for information and complete explanation of data.

Referenced by

Bates, M.A, Benninghoff, A., Gilley, K.N, Holian, A., Harkema, J.R, Pestka, J.J, (2019). Mapping of Dynamic Transcriptome Changes Associated with Silica-Triggered Autoimmune Pathogenesis in the Lupus-Prone NZBWF1 Mouse. Frontiers in Immunology, doi: 10.3389/fimmu.2019.00632

Language

eng

Code Lists

see individual README files. Full explanation of data is available in the corresponding journal article.

Comments

supplementary files for journal article

Disciplines

Medical Toxicology

License

Creative Commons License
This work is licensed under a Creative Commons Attribution 4.0 License.

Checksum

0aa5a4e887fe8f2e83eb6b9beff0dc57

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Additional Files

README_supplementary_file_1.txt (1 kB)
MD5: 52fd7195873225f3d9fecd01e1c06357

Supplementary_file_1_probe_annotations.csv (126 kB)
MD5: c098ae9872347b862de1e550a31c7d18

README_supplementary_file_2.txt (2 kB)
MD5: fb570218b3485d5c1afc0620d47defeb

Supplementary_file_2_nSolver_differential_expression_analysis_results.xlsx (687 kB)
MD5: 0cf58d4fadf859772e7ead103d8334ee

README_supplementary_file_3_.txt (1 kB)
MD5: b81d6bfa34e4af86b48020ef1f37d836

Supplementary_file_3_nSolver_significance_scores.xlsx (14 kB)
MD5: b81d6bfa34e4af86b48020ef1f37d836

README_supplementary_file_4_.txt (1 kB)
MD5: 63ef04251ab20e773114d8c37693ec95

README_supplementary_file_5_.txt (1 kB)
MD5: cf185313a3d9a3c7f6f4cb087c0ff762

Supplementary_file_5_nSolver_cell_type_profiling_scores.xlsx (41 kB)
MD5: ab38237fd8f154280e4ff9966db8e76e

Supplementary_file_4_nSolver_pathway_scores.xlsx (97 kB)
MD5: 054eddb14b30d079edca20f97009d124

Supplementary_file_6_STRING-db_networks_and_predicted-clusters.xlsx (226 kB)
MD5: 8c8224a63cb953f7c2b3de429359e2c1

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