Pteridium nuclear gene phylogeny

Creators

Paul G. Wolf, Utah State UniversityFollow
Carol Rowe, Utah State UniversityFollow
Sylvia Kinosian, Utah State UniversityFollow
Joshua P. Der, California State University, FullertonFollow
Peter J. Lockhart, Massey UniversityFollow
Lara D. Shepherd, Massey University
Patricia A. McLenachan, Massey UniversityFollow
John A. Thomson, National Herbarium of New South WalesFollow

Description

Raw amplicon sequence data and raw reads of from GBS library. Also all code and analyses required to process raw data.

Author ORCID Identifier

Paul G. Wolf https://orcid.org/ 0000-0002-4317-6976

Sylvia Kinosian https://orcid.org/ 0000-0002-0918-7196

Joshua Der https://orcid.org/ 0000-0001-9668-2525

Lara D. Shepherd https://orcid.org/ 0000-0002-7136-0017

OCLC

1090815487

Document Type

Dataset

DCMI Type

Dataset

File Format

.fastq, .txt, .rmd, .html

Viewing Instructions

***A zipped version of this dataset is available. Contact RDMS (researchdata@usu.edu) for more details.*** Data posted here includes: 1. markdown files detailing analyses of amplicon data (Pteridium_amplicon_pipeline.Rmd) 2. Raw amplicon sequence data as a compressed file of fastq reads (Pteridium_amplicon.zip) 3. Compressed folder of final clustered/filtered fasta sales fro amplicon sequencing:trim99_pandaseq_merged_reads.zip 4. Pteridium_GBS_Tutorial.html - pipeline for analysis of GBS data (also see https://github.com/sylviakinosian/Pteridium_GBS_Pipeline) 5. The raw data are in compressed fastq files that have been split for ease of data transfer. Files are xaa_Pter_GBS.fastq.gz though xan.etc. These need to be unzipped and concatenated as directed in the README file

Publication Date

2-28-2019

Funder

Mary Gunson Memorial Bequest

NSF, Graduate Research Fellowship

Publisher

Utah State University

Methodology

see publication for methodology

Scientfic Names

Pteridium

Related Content

Wolf, P. G., Rowe, C. A., Kinosian, S. P., Der, J. P., Lockhart, P. J., Shepherd, L. D., McLenachan, P. A., & Thomson, J. A. (2019). Worldwide relationships in the fern genus Pteridium (bracken) based on nuclear genome markers. American Journal of Botany, 106(10), 1365–1376. https://doi.org/10.1002/ajb2.1365

Language

eng

Disciplines

Botany | Plant Breeding and Genetics

License

This work is licensed under a Creative Commons Attribution 4.0 License.

Recommended Citation

Wolf, P. G., Rowe, C. A., Kinosian, S. P., Der, J. P., Lockhart, P. J., Shepherd, L. D., McLenachan, P. A., & Thomson, J. A. (2019). Pteridium nuclear gene phylogeny. Utah State University. https://doi.org/10.26078/P64T-9H61

Checksum

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