Data from: Consumption of the Total Western Diet Promotes Colitis and Inflammation-Associated Colorectal Cancer in Mice

Creators

Abby D. Benninghoff, Utah State UniversityFollow

Description

Gene expression data for colon tissues obtained prior to, during, and after onset of colitis in mice fed either a standard or Western type diet.

File 1: probe annotations.

File 2: nSolver differential expression analysis results.

File 3: Gene set analysis

File 4: nSolver pathway scores

File 5: STRING-db networks and clusters

File 6: Metascape ontology results

File 7: nSolver cell type profiling scores

Author ORCID Identifier

Abby D. Benninghoff https://orcid.org/ 0000-0002-7993-0117

OCLC

1143847690

Document Type

Dataset

DCMI Type

Dataset

File Format

.csv, .xlsx, .docx

Viewing Instructions

Files 2 through 7 are Microsoft Excel files. Supplemental files 1 through 7 are Microsoft Word files.

Publication Date

2-19-2020

Funder

Utah Agricultural Experiment Station

Publisher

Utah State University

Referenced by

Benninghoff, A. D., Hintze, K. J., Monsanto, S. P., Rodriguez, D. M., Hunter, A. H., Phatak, S., Pestka, J. J., Van Wettere, A. J., & Ward, R. E. (2020). Consumption of the Total Western Diet Promotes Colitis and Inflammation-Associated Colorectal Cancer in Mice. Nutrients, 12(2), 544. https://doi.org/10.3390/nu12020544

Language

eng

Code Lists

Code lists for each file is located in the associated, numbered supplemental files

Comments

File 1: probe annotations.

File 2: Microsoft Excel document with output from nSolver for differential expression analyses for pairwise comparisons noted by each named sheet.

File 3: Microsoft Excel document with output from nSolver for global and directed significance scores for immune pathways.

File 4: Microsoft Excel document with output from nSolver for immune pathway Z scores for pairwise comparisons noted by each named sheet.

File 5: Microsoft Excel document with protein networks obtained from STRING database and clusters predicted by the MCL algorithm.

File 6: Microsoft Excel document with output from Metascape ontology analyses for specific pairwise comparisons of diet groups at each time point or to prior published expression data.

File 7: Microsoft Excel document with output from nSolver for cell type profiling calculated as raw or relative scores.

Disciplines

Toxicology

License

This work is licensed under a Creative Commons Attribution 4.0 License.

Identifier

https://doi.org/10.26078/q4x4-6894

Recommended Citation

Benninghoff, A. D. (2020). Consumption of the total Western diet promotes colitis and inflammation-associated colorectal cancer in mice. Utah State University. https://doi.org/10.26078/Q4X4-6894

Checksum

215b9795b657a87e03e83798a6f06240