Mapping transcriptional changes associated with the maternal-to-embryonic transition in bovine embryos to small non-coding RNA profiles in both in vitro-fertilized and scNT cattle embryos

Creators

Abby D. Benninghoff, Utah State UniversityFollow
Jocelyn Cuthbert, Utah State UniversityFollow

Description

Supplementary File 1. Normalized reads for annotated mRNA transcripts. Microsoft Excel document providing normalized sequencing reads per sample.

Supplementary File 2. Results of DESeq2 analyses for annotated mRNAs. Microsoft Excel document with results of DESeq2 differential expression analysis comparing scNT vs IVF embryos at each developmental stage and sequential comparisons of developmental stage for both IVF and scNT embryos.

Supplementary File 3. Results of Metascape ontology analyses for differentially expressed mRNAs. Microsoft Excel document with results of Metascape ontology analyses for biological processes associated with predicted mRNA targets of differentially expressed miRNAs.

Supplementary File 4. Cytoscape networks for differentially expressed miRNAs and their predicted mRNA targets. PDF document depicting Cytoscape networks for differentially expressed miRNAs and their predicted targets.

Author ORCID Identifier

Abby D. Benninghoff https://orcid.org/ 0000-0002-7993-0117

Jocelyn Cuthbert https://orcid.org/ 0000-0002-9985-0392

OCLC

1153396128

Document Type

Dataset

DCMI Type

Dataset

File Format

.xlsx, .pdf, .docx

Publication Date

4-23-2020

Funder

USDA, National Institute of Food and Agriculture (NIFA)

Embargo Period

12-31-2020

Award Number

USDA, National Institute of Food and Agriculture (NIFA) 2018-67011-28087

Award Title

DNA Methylation and MicroRNA Expression in Bovine Somatic Embryos

Referenced by

This data set is supporting material for a dissertation and a forthcoming journal article.

Language

eng

Code Lists

See the applicable DC form file for the code list.

Comments

The DC_form_file_4-x files contain the README information and code list for each Supplementary file, with "x" corresponding with the applicable file.

Disciplines

Developmental Biology

License

This work is licensed under a Creative Commons Attribution 4.0 License.

Identifier

https://doi.org/10.26078/svr1-5r53

Recommended Citation

Benninghoff, A. D., & Jocelyn. (2020). Mapping transcriptional changes associated with the maternal-to-embryonic transition in bovine embryos to small non-coding RNA profiles in both in vitro-fertilized and scNT cattle embryos. Utah State University. https://doi.org/10.26078/SVR1-5R53

Checksum

e0391d12ca913587908187a769b253d8