Supplementary File 1. Normalized reads for annotated mRNA transcripts. Microsoft Excel document providing normalized sequencing reads per sample.
Supplementary File 2. Results of DESeq2 analyses for annotated mRNAs. Microsoft Excel document with results of DESeq2 differential expression analysis comparing scNT vs IVF embryos at each developmental stage and sequential comparisons of developmental stage for both IVF and scNT embryos.
Supplementary File 3. Results of Metascape ontology analyses for differentially expressed mRNAs. Microsoft Excel document with results of Metascape ontology analyses for biological processes associated with predicted mRNA targets of differentially expressed miRNAs.
Supplementary File 4. Cytoscape networks for differentially expressed miRNAs and their predicted mRNA targets. PDF document depicting Cytoscape networks for differentially expressed miRNAs and their predicted targets.
Author ORCID Identifier
Abby D. Benninghoff https://orcid.org/ 0000-0002-7993-0117
Jocelyn Cuthbert https://orcid.org/ 0000-0002-9985-0392
.xlsx, .pdf, .docx
USDA, National Institute of Food and Agriculture (NIFA)
USDA, National Institute of Food and Agriculture (NIFA) 2018-67011-28087
DNA Methylation and MicroRNA Expression in Bovine Somatic Embryos
This data set is supporting material for a dissertation and a forthcoming journal article.
See the applicable DC form file for the code list.
This work is licensed under a Creative Commons Attribution 4.0 License.
Benninghoff, A. D., & Jocelyn. (2020). Mapping transcriptional changes associated with the maternal-to-embryonic transition in bovine embryos to small non-coding RNA profiles in both in vitro-fertilized and scNT cattle embryos. Utah State University. https://doi.org/10.26078/SVR1-5R53
Additional FilesSupplementary_File_1.xlsx (11583 kB)
DC_form_file_4.1.docx (16 kB)
Supplementary_File_2.xlsx (25300 kB)
DC_form_file_4.2.docx (17 kB)
Supplementary_File_3.xlsx (332 kB)
DC_form_file_4.3.docx (17 kB)
Supplementary_File_4.pdf (508 kB)
DC_form_file_4.4.docx (16 kB)