Department of Biological Engineering. This department was previously known as Biological and Irrigation Engineering. The name was changed in February 2010.

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Creative Projects

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Catalytic Pyrolysis of Poly Vinyl Chloride as a Viable Way of Waste Management, Randy Santos and Foster A. Agblevor

Dissertations

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Alkaloid Production by Hairy Root Cultures, Bo Zhao

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Anaerobic Co-Digestion of Algal Biomass and a Supplemental Carbon Source Material to Produce Methane, Yousef Soboh

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Bio-Inspired Materials and Micro/Nanostructures Enabled by Peptides and Proteins, Swathi Swaminathan

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Biomethanation and Alkaline Wet Air Oxidation of Water Hyacinth (Pontederia crassipes) from Ozama River, Dominican Republic, Yessica A. Castro

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Catalytic Pyrolysis of Cellulose and D-Glucose Using Formulated Red Mud, Sand, and HZSM-5, Hamza Abdellaoui

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Cationic Starch Synthesis, Development, and Evaluation for Harvesting Microalgae for Wastewater Treatment, Renil John Anthony

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Characterization and Application of Dynamic in vitro Models of Human Airway, Hemangkumar J. Patel

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Characterization and Performance of Algal Biofilms for Wastewater Treatment and Industrial Applications, Maureen Kesaano

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Characterizing the Variability and Heterogeneity of Stem Cells by Engineering Methods, Junnan Geng

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Design of a BioBrickTM Compatible Gene Expression System for Rhodobacter sphaeroides, Junling Huo

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Determination of Gas Emission Characteristics From Animal Wastes Using a Multiplexed Portable FTIR-Surface Chamber System, Pakorn Sutitarnnontr

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Development and Characterization of Aqueous-Based Recombinant Spider Silk Protein Biomaterials with Investigations into Potential Applications, Thomas I. Harris

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Development of Molecular Sensor and Imaging Analysis Techniques for Improving Life Quality, Wei Zhang

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Distribution of Heavy Metals from Flue Gas in Algal Bioreactor, Katerine Napan

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Effect of Physical Stimuli on Angiogenic Factor Expression in Retinal Pigment Epithelial Cells, Farhad Farjood

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Engineering of Polyketide Biosynthetic Pathways for Bioactive Molecules, Siyuan Wang

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Exploring the Capacity of Bacteria for Natural Product Biosynthesis, Ozkan Fidan

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Exploring Versatile Glycosyltransferases From Microorganisms for Natural Product Biosynthesis, Jie Ren

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Expression Systems for Synthetic Spider Silk Protein Production, Michaela R. Hugie

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Fluoro-Silane as a Functional Monomer for Protein Conformational Imprinting, Yun Peng

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Hydrodeoxygenation of Pinyon-Juniper Catalytic Pyrolysis Oil, Hossein Jahromi

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Identification and Engineering of Nonribosomal Peptide Biosynthetic Systems, Fuchao Xu

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Investigating RPE Cell Response to Physical Phenomena, Chase Paterson

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Investigation and Engineering of Polyketide Biosynthetic Pathways, Lei Sun

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Investigation of the Tailoring Steps in Pradimicin Biosynthesis, Kandy L. Napan

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In Vitro, Non-Invasive Imaging and Detection of Single Living Mammalian Cells Interacting with Bio-Nano-Interfaces, Qifei Li

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Laboratory Scale Anaerobic Reactors for Bioenergy from Wastes: Materials, Mathematical Models, and Stoichiometry, Yehor Pererva

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Micro-Biosensor Devices for Biochemical Analysis Applications, Han Zhang

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Molecular Sensing and Imaging of Human Disease Cells and Their Responses to Biochemical Stimuli, Lifu Xiao

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Production and Biocompatibility of Spider Silk Proteins in Goat Milk, Richard E. Decker Jr

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Production of Synthetic Spider Silk Fibers, Cameron G. Copeland

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Raman Microspectroscopy, Atomic Force Microscopy, and Electric Cell-Substrate Impedance Sensing For Characterization of Bio-Interfaces: Molecular, Bacteria, and Mammalian Cells, Gerald Dustin McEwen

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Recombinant Piriform Spider Silk Production, Cole R. Peterson

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Silane Modulation of Protein Conformation and Self-Assembly, Abul Bashar Mohammad Giasuddin

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Spatial Light Dilution as a Technique for Conversion of Solar Energy to Algal Biomass, Daniel J. Dye

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Sustainable Production of Novel Biomaterials in Escherichia coli, Asif Rahman

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The Effects of Laser Etching on Biocompatability and Mechanical Properties of Polyetheretherketone, Andrew I. Deceuster

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The Use of Microfluidics and Dielectrophoresis for Separation, Concentration, and Identification of Bacteria, Cynthia Hanson

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Utilizing Municipal and Industrial Wastes for the Production of Bioproducts: From Metagenomics to Bioproducts, Joshua T. Ellis

Reports

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3D Patterning For Cell Culture: Bioprinting and a Novel Microcontact Printing Device, Calder Lake

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Cell Imaging and Data Analysis for Biomaterial-Mammalian Co-Cultures, Jefferson Pontsler

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Designing a Clarifier to Recover Wastewater Algae Biomass for Production of Biofuels, Elizabeth Martinez

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Field Calibration of the Float Method in Open Channels, Jorge Escurra

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Investigation of the Biosynthetic Process of Indigoidine, Yi Chen

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Methane Emission Treatment and Potential Upcycling using Methylomicrobium alcaliphilum, Jace Parkinson

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Methods for Growing Retinal Pigment Epithelial Cells: Current Protocols and Future Recommendations, Aaron H. Fronk

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Optimization of Polyhydroxybutyrate Production in Recombinant Escherichia Coli Through Metabolic Modeling and Simulation, Yoshitaro Heshiki

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Quantitative Analysis of Protective Effect of Resveratrol Against Nanoplastic-Induced Oxidative Stress, Bryan Gustafson

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Strategies to Enhance Conversion of Lignocellulosic Biomass to Fermentable Sugars and to Enhance Anaerobic Digestion of Algal Biomass for Biogas Production, Kristen M. Sims

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Sustainable Waste-to-Bioproducts Engineering Center Laboratory Safety Project, Claudine Mock

Theses

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Algae-Based Biofilm Productivity and Treatment of Dairy Wastewater: Effects of Temperature and Organic Carbon Concentration, Zachary T. Fica

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Algal Biofilm Production and Harvesting System for Wastewater Treatment with Biofuels By-Products, Logan Christenson

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Alternative Treatment Technologies for Low-Cost Industrial and Municipal Wastewater Management, Alan J. Hodges

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Anaerobic Digestion of Wastewater: Effects of Inoculants and Nutrient Management on Biomethane Production and Treatment, Jason Peterson

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Analysis of an Outdoor Pilot-Scale Rotating Algae Biofilm Reactor for Power Optimization, Ash-Enhanced Productivity, And Nutrient Uptake, Peter F. Jeppesen

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A Study of Evaporation and Evapotranspiration in Peru, Fernando Chanduvi-Acuña

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A Study on the Applications and Toxicity Assessments of Carbon Nanotubes in Tissue Engineering, Rena Baktur

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A Synthetic Biological Engineering Approach to Secretion- Based Recovery of Polyhydroxyalkanoates and Other Cellular Products, Elisabeth Linton

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Biodiesel Production from Mixed Culture Algae Via a Wet Lipid Extraction Procedure, Ashik Sathish

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Biomass and Phycocyanin from Oil and Natural Gas Extraction Produced Water Utilizing a Cyanobacteria Dominated Rotating Algal Biofilm Reactor (RABR), Jonathan L. Wood

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Catalytic Fast Pyrolysis of Whole Field Pennycress Biomass, Yonas Afewerki Kidane

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Catalytic Pyrolysis of Olive Mill Wastewater Sludge, Hamza Abdellaoui

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Characterization of Biofilms in a Synthetic Rhizosphere Using Hollow Fiber Root-Mimetic Systems, Michelle Bonebrake

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Characterization of Chinese Hamster Ovary Cell Performance with Pentanoic Acid and N-Acetyl Cysteine Treatment, Joseph Camire

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Comparative Studies on Oxygen Mass Transfer for the Design and Development of a Single-Use Fermentor, Kristan L. Sorenson

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Comparative Studies on Scale-Up Methods of Single-Use Bioreactors, Emily B. Stoker

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Conventional and Catalytic Pyrolysis of Pinyon Juniper Biomass, Bhuvanesh Kumar Yathavan

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Cross Flow Filtration for Mixed-Culture Algae Harvesting for Municipal Wastewater Lagoons, Misheka Wilson

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Cytomegalovirus Inhibition by Pluronic-Encapsulated Quercetin and Synergy with Ganciclovir, Ian Wadsworth

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Designing Predictive Mathematical Models for the Metabolic Pathways Associated with Polyhydroxybutyrate Synthesis in Escherichia coli, Angela Dixon

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Development and Optimization of a Produced Water, Biofilm Based Microalgae Cultivation System for Biocrude Conversion with Hydrothermal Liquefaction, Benjamin L. Peterson

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Development and Validation of a Synchronous Model to Simulate Skeletal Muscle Damage Due to Spaceflight Ionizing Radiation and Microgravity, Lori M. Caldwell

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Effect of Poultry Litter Biochar on Saccharomyces cerevisiae Growth and Ethanol Production from Steam-Exploded Poplar and Corn Stover, Oumou Diallo

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Effects of Indole Derivative IDC16 on Cell Proliferation, Transfection, and Alternative Splicing in Production of Lentiviral Vectors by Transient Co-Transfection, Nataly Mier

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Engineered Microalgae Cultivations Systems: Conversion of Wastewater Nutrients Into Biofuels and Bioplastics, Jacob Watkins

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Evaluation Optimization of Large-Scale Plasmid DNA Production Process of Harvest, Resuspension, Lysis, and Neturalization at Large and Small Scale, Zachary S. Hyde

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Excimer-Monomer Switching Molecular Beacon: The Study on Synthetic Cryptosporidium DNA Detection, Thermodynamics, and Magnesium Effects, Michael L. Davis

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Increasing Production of Therapeutic mAbs in CHO Cells Through Genetic Engineering, Charles Barentine

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Investigating Biosynthetic Steps of an Angucycline Antifungal, S. Gabrielle Gladstone

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Investigations of Polyhydroxyalkanoate Secretion and Production Using Sustainable Carbon Sources, Chad L. Nielsen

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In Vitro Simulation of Microgravity Induced Muscle Loss Successfully Increases Expression of Key In Vivo Atrophy Markers, Charles P. Harding

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Lentiviral Vector Production at High Cell Density by Transient Transfection of Suspended Culture HEK Cells, Jacob G. Accordino

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Low Resource Assay for Tracking SARS-CoV-2 in Wastewater, Julissa van Renselaar

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Mechanical and Physical Properties of Spider Silk Films Made from Organic and Water-Based Dopes, Chauncey Lewis Tucker

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Metabolic Modeling of Spider Silk Production in E. coli, Sarah Allred

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Methods Development, Design Analysis, and Testing of Novel Centrifugal Devices for Mammalian Cell Culture Harvest, W. Aaron Dryden

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Microfabrication of Bio-Analytical Devices: Microelectrode Array and Traveling-Wave Electrophoresis, Neil Draper

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Microfabrication of Electrochemical Analytical Devices for Detection of Pathogen Species DNA and Toxic Metal Ions, Spencer Williams

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Non-Catalytic Co-Gasification of Sub-Bituminous Coal and Biomass, Guevara Che Nyendu

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Novel Kinetic Description of Real-Time Polymerase Chain Reaction Characterizes Interrelated Effects of Sample, Master Mix, and Cycle Time, David Tafur

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Novel Methods to Produce Large Recombinant Spider Silk Proteins via Polymerization, Nathan L. Hebert

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Novel Three-Dimensional Scaffold for Skeletal Muscle Tissue, Matthew H. Clegg

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Observation of Struvite in the Mixed Microalgae Biofilm Matrix of a Rotating Algal Biofilm Reactor During Nutrient Removal from Municipal Anaerobic Digester Filtrate, Kyle M. Hillman

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Optimization of Biogas Production by Use of a Microbially Enhanced Inoculum, Anna Doloman

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Optimization of Dissolved Air Flotation for Algal Harvesting at the Logan, Utah Wastewater Treatment Plant, Andrew R. Elder

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Optimization of Wastewater Microalgae Pretreatment for Acetone, Butanol, and Ethanol Fermentation, Yessica A. Castro

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Production and Purification of Synthetic Minor Ampullate Silk Proteins, Danielle A. Gaztambide

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Production of Phenol-Formaldehyde Adhesives from Catalytic Pyrolysis Oil, Angela M. Akude

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Protecting Crops from Abiotic Stress: Copper Oxide Nanoparticle Effects on Wheat and a Beneficial Rhizobacterium, Matthew Potter